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Understanding Fibromyalgia (FM)

Fibromyalgia (FM)

Understanding the Underlying Causes of Widespread Pain and Fatigue

Fibromyalgia (FM) is a modern diagnostic term used to describe a constellation of symptoms—most notably, widespread muscular pain and heightened sensitivity at specific tender points throughout the body. While pain may begin in a localized area such as the neck or shoulders, over time it typically spreads and becomes more generalized.

🧠 Common Symptoms

FM pain is often described as:

  • Burning, radiating, gnawing, sore, stiff, or aching
  • Fluctuating based on weather, activity, sleep, and stress
  • Accompanied by fatigue, often severe, affecting daily function

Many patients describe feeling “flu-like”, even in the absence of an actual infection. Up to 90% of FM patients report profound fatigue, decreased stamina, and unrefreshing sleep.

😴 The Sleep Connection

Sleep studies have shown that many individuals with FM experience abnormal sleep architecture, especially disturbances in deep (restorative) sleep. This may help explain why patients wake feeling exhausted despite a full night’s rest.

🧩 Cognitive & Mood Symptoms

FM often overlaps with Chronic Fatigue Syndrome (CFS). Common overlapping symptoms include:

  • Poor memory
  • Brain fog
  • Difficulty concentrating
  • Mood swings
  • Confusion

These cognitive and emotional symptoms contribute to the overwhelming nature of FM and its impact on quality of life.


Exploring Root Causes

At its core, FM appears to be part of a broader infection-like or environmental illness syndrome. Triggers may include:

  • Undetected bacterial or viral infections
  • Environmental toxicants
  • Chronic stress and immune dysfunction

In many cases, genetics play a role, influencing how a person responds to a given pathogen or environmental exposure. This helps explain the high variability of symptoms from person to person.


Why Identification Matters

Effective treatment starts with identifying underlying causes. Proper testing can help reveal:

  • Hidden infections (bacterial, viral, fungal, or parasitic)
  • Immune system imbalances
  • Nutritional or mitochondrial deficiencies
  • Environmental or toxic burdens

Once the root cause(s) are identified, a targeted treatment plan using nutrition, herbal medicine, lifestyle changes, and in some cases, antimicrobial therapies can support the healing process and improve function.

Ozone for Tick-Borne Disease, Mold Illness, and COVID

Ozone (O3) is a powerful oxidant gas and is found in the earth’s atmosphere. It has antimicrobial properties and may be beneficial in the treatment of infections.

I personally went to Mexico 18 years ago to receive ozone treatment after finishing antibiotic therapy for Lyme Disease and Bartonella. While I had high hopes that the ozone would completely eradicate my infections, I was wrong. Subsequent testing after treatment yielded positive Lyme Disease and Bartonella tests.

I do, however, encourage patients to do an 8 or 10 pass ozone therapy AFTER finishing antimicrobials, antifungals, or antivirals, because I believe that ozone heals the endothelium of vessels that were damaged by infection and/or mycotoxins. Please, remember: OZONE SHOULD NOT BE A SUBSTITUTE for proper antimicrobial, antifungal, or antiviral treatment. It should be considered an add-on therapy and administered by a qualified health care provider. Please call my office at (206) 299-2676 for references for qualified physicians who perform this treatment.

Ammonia Toxicity in the Brain of Tick-Borne Disease Patients

Most patients with neurological Lyme Disease and coinfections (i.e., MS, ALS, Parkinson’s Disease, Autism), have elevated levels of ammonia toxicity in the brain which is neurotoxic. This is due to the fact that the spirochete, Borrelia burgdorferi, produces urease enzymes, and ammonia accumulation results. Sometimes ammonia levels will be elevated in the blood, and many times they are also normal. This is because the ammonia concentration is localized in specific tissues (brain), where the concentration is not high enough to be detected in the blood. But that doesn’t mean that ammonia is not causing destruction. It is VERY neurotoxic and needs to be removed with herbal supplements and diet adjustments.

A diet rich in arginine (an amino acid), is linked to increased ammonia levels, and therefore should be avoided. Arginine is found in nuts, seeds, chicken, salmon, shrimp, dairy, oats, soybeans, and coconut. Removing these foods from the diet will help minimize the ammonia load on the body. Cellular and tissue detox strategies are necessary to remove excess ammonia from the body.

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If you would like to discuss ammonia toxicity further with Dr. Marra,

The facts about Chronic Fatigue Syndrome

Chronic fatigue syndrome (CFS) is a late 20th century buzz word used to convey a constellation of symptoms that patients’ experience, but it is a NOT formal diagnosis. Extreme exhaustion, poor stamina coupled with difficulty concentrating and poor memory render patients nearly completely disabled.  Additionally, CFS may be accompanied by flu-like symptoms, joint and muscle aches, unrefreshing sleep, tender lymph nodes, sore throat and headache. This constellation of symptoms is similar to that which would be seen in many viral or bacterial infections such as walking pneumonia, strep throat, Borreliosis/ Lyme disease or even AIDS.  Another distinct set of symptoms associated with CFS includes: post-exertional malaise, a worsening of symptoms following physical or mental exertion that occurs within 24-48 hours of the exertion, and requiring an extended recovery period.  Neuroimmune and endocrine abnormalities are also frequently observed in CFS, and patients may require hormonal support including: thyroid, pregnenolone, DHEA, estrogen and/or progesterone and testosterone.  Patients are generally unable to appropriately respond to stress and may require low doses of cortisol or the natural equivalent as well.  Sleep disorders are also common in this patient population and may require natural sleep aids like melatonin or prescription sleep medication

The argument can be made that CFS is simply a set of symptoms particular to a patient that arises as the result of exposure to a specific pathogen(s). Proper identification of the infection causing the symptoms is the way in which patients can hope to find relief from this debilitating condition.  We believe that proper diagnosis requires extensive blood and possibly stool testing.  Additionally, when the infection is identified, extensive immune system support is necessary to help patient’s fight the infection(s), and also promotes inherent self-healing tendencies. Healing the immune system is JUST as important as identifying the pathogen then for recovery to occur. Also, various detoxification regimens may be required to cleanse the extracellular matrix of toxins and cellular debris.  A holistic approach to pathogen identification as well as treatment seems to be the most efficacious way to return patients to a functional life and optimal health.

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Additionally, elevated proinflammatory cytokines cause disruption in the production of several neurotransmitter systems that are required for basic brain function.  Certain neurotransmitters that are characteristically low in Borreliosis/Lyme disease patients contribute significantly to excessive fatigue and mood disorders.  Talk to your doctor about urine/saliva neurotrasmitter testing and genetic testing through 23andme.com and geneticgenie.org.

One explanation for chronic fatigue involves mitochondrial metabolic dysfunction.  Mitochondria are organelles within the cell that are responsible for generating ATP.  ATP is the “power” molecule providing energy to cells, tissues and organs.  Mitochondrial damage may result from cellular hy

Oxidative Stress and Mycotoxins

Mycotoxins can cause oxidative stress. Oxidative stress is an intracellular imbalance that occurs in chronic disease where reactive oxygen species are not readily removed and detoxified into more inert compounds in the body. This results in cellular dysfunction leading to disease. The production of free radicals and peroxides are chemicals that cause intracellular organelle damage and prevent normal cellular function. Mycotoxin exposure significantly increases oxidative stress and therefore reduces glutathione. When glutathione is low, disease ensues.

However, glutathione can be replenished by an oral paste or liquid very effectively. When glutathione levels return to normal, proper cellular function ensues and often disease-causing symptoms diminish substantially. For more details please ask Dr. Marra for more details on how mycotoxins can cause oxidative stress in your next appointment.

Mycotoxins and Mold Exposure

Mycotoxins and mold are metabolites of fungal organisms that are toxic to the human body and exposure can be present in both food and air. Two food-borne mycotoxins are Aflatoxin and Ochratoxin. Aflatoxin is produced by many species of Aspergillus fungi and can be found in soil, peanut butter, olive oil, and some cosmetics. Ochratoxin is also produced by Aspergillus species and can be found in cereal, coffee, and wine. It too has disease-causing effects on the body and has a half-life of 35 days.

In September 2012, Dr. Dennis Hooper, director of Realtime Laboratories in Carrollton, Texas, presented information on the new technology available to investigate mycotoxins and mold exposure in patients. He has developed a urine PCR test for identifying mycotoxins, which are known causative agents in many chronic diseases and probably complicate healing from Lyme disease.

Additionally, Trichothecenes are airborne mycotoxins produced by several molds but most notably, Stachybotrys, otherwise known as “black mold.” Stachybotrys is a mold that arises from damp conditions and water leakage in homes. These toxins can produce significant irritation to the mucosal lining of the lungs, GI tract, bladder, and brain causing chronic illness. Patients exposed to Trichothecenes often report having severe headaches and brain fog which lessen when they change to a mold-free environment.

However, mycotoxins can get trapped in the body by adhering to fat cells or entering cells (especially adipocytes) causing oxidative stress. Oxidative stress for prolonged periods of time depletes intracellular glutathione and interferes with the cell’s ability to self-repair.

Herxheimer Reaction (HERX)

The Jarisch-Herxheimer reaction was originally noted in 1895 by Dr. Jarisch who worked with Syphyllis (a spirochete) patients.  In the 21st century, we observe Herxheimer reactions in tick-borne illnesses such as Lyme Disease, also caused by a spirochete.  A Herxheimer reaction (Herx) typically occurs hours to days after antimicrobial administration and is thought to be the result of endotoxins released into the bloodstream by dying spirochetes.  The body’s immune system then responds to the endotoxins and the concurrent release of cytokines (i.e., tumor necrosis factor, interleukin 6, and interleukin 8) which are chemical messenger molecules of the immune system producing exaggerated symptoms lasting 3 days up to several weeks.

Dr. Marra doses antibiotics specifically for the individual patient so that the Herxheimer reaction on a scale of 1-10, is about a 5.  This is her own technique, and she feels that severe Herxheimer reactions over prolonged periods of time may cause tissue damage from the excessive release of endotoxins and cytokines.  Tissues become friable as the result of chronic inflammation, not unlike what happens when a sponge is repeatedly used and the surface area becomes frayed.  Dr. Marra is not convinced that this kind of tissue damage is reversible which is why she chooses to take the route of treatment that she does.  However, many other physicians choose to treat more aggressively and seem to have good results. This is simply her own treatment preference.

The general description of a Herxheimer reaction is a temporary increase in symptoms but may also include the development of completely new symptoms.  More specifically, the most common complaints of a Herx reaction are increased joint and muscle pain, headaches, chills, night sweats, fever (usually low grade), extreme fatigue, and brain fog or lack of mental clarity, drop in blood pressure, hives, or a rash of some sort.  Worth noting here is that a rash or hives can sometimes be mistaken for an allergic reaction.  It is up to the treating physician to determine this, but with close, experienced observation and the use of Benadryl, Alka Seltzer Gold, Quercitin, warm lemon water and vitamin C (see Herx management), unnecessary premature cessation of antibiotics may be prevented.  In more severe cases of Herxheimer reactions, a reduction in the antibiotic dosage or cessation of the antimicrobials may be required.

The timing of a Herx reaction is very individualistic and can occur within days to weeks after the onset of antibiotic treatment.  In some patients, a Herxheimer reaction occurs only once or twice, or not at all throughout treatment.  It is clear however, that as you move through the treatment and the spirochetal load becomes decreased, the Herx reactions become less and less severe.  Herxheimer reactions can also occur in cycles (usually 4 week cycles) and may be affected by the lunar cycle.  This is anecdotal but it is an interesting observation in some people.

About 70-80% of people undergoing Lyme Disease treatment with antibiotics experience some sort of Herxheimer reaction.  It is thought by a number of physicians and scientists that these people have difficulty in detoxification processes, and that perhaps there may be a defect in one of the detox pathways in the liver.  This may be genetic, environmental or a combination of both.  But without question, maintaining an alkaline diet and an  “alkaline bioterrain” helps lessen the effects of a Herx reaction.  The 20% of patients who do not experience a Herx reaction should not feel like they are getting nowhere by taking antibiotics.  Discussion of this issue should be left to the patient and their treating physician.

Check out our page about alkalizing foods.